PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g079140.1
Common NameMTR_5g079140
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 141aa    MW: 16004.3 Da    PI: 9.2712
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g079140.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.6e-087302448
                     HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48
                     W++Ia++++ gRt++++k++w+++l
  Medtr5g079140.1  7 WTLIAARLQ-GRTANDVKNYWNTHL 30
                     *********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.362134IPR017930Myb domain
CDDcd001675.15E-6730No hitNo description
PfamPF002491.2E-6730IPR001005SANT/Myb domain
SuperFamilySSF466894.21E-6733IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.8E-10737IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MLDLIIWTLI AARLQGRTAN DVKNYWNTHL KNKDVSRAKE KKEKDNPKEI IKAHEVIKPR  60
PLTFSTHSPW LNGKHNFVTH PILGNVPRYH DASSDTIVSD QIGRDCASDS QPRLGNDPIL  120
CVQCGCSSLQ EQNYKVFKWL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1022090.0FP102209.3 Medicago truncatula chromosome 5 clone mtf83-137p9, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616353.11e-102myb-like DNA-binding domain protein
TrEMBLG7K1W31e-102G7K1W3_MEDTR; Myb-like DNA-binding domain protein
STRINGGLYMA09G36966.12e-17(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-12myb domain protein 113
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]